STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61743.1COG3182 Uncharacterized iron-regulated membrane protein. (447 aa)    
Predicted Functional Partners:
AFK61744.1
COG2847 Uncharacterized protein conserved in bacteria.
  
    0.759
AFK62084.1
IucA/IucC protein; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
 
  
 0.641
AFK62083.1
Alcaligin biosynthesis protein; COG3486 Lysine/ornithine N-monooxygenase.
 
    0.604
AFK61745.1
COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.
       0.597
AFK63933.1
TonB-dependent copper receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.547
AFK63448.1
ModE family transcriptional regulator; COG2005 N-terminal domain of molybdenum-binding protein.
     
 0.400
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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