STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61823.1Succinylglutamate desuccinylase/aspartoacylase family protein; COG3608 Predicted deacylase. (332 aa)    
Predicted Functional Partners:
AFK61821.1
Histidine ABC transporter, permease HisQ; COG4215 ABC-type arginine transport system, permease component.
 
    0.836
AFK61822.1
COG4160 ABC-type arginine/histidine transport system, permease component.
  
    0.811
AFK61820.1
Lysine-arginine-ornithine-binding periplasmic protein precursor; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
 
    0.507
AFK64416.1
Family 1 extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
     0.483
AFK61135.1
Polar amino acid ABC transporter inner membrane subunit; COG4160 ABC-type arginine/histidine transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.438
AFK61611.1
ABC transporter-like protein; COG4598 ABC-type histidine transport system, ATPase component.
 
    0.412
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.