STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61903.1Oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating). (418 aa)    
Predicted Functional Partners:
AFK61905.1
Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
    0.688
AFK61901.1
Polar amino acid ABC transporter inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 
     0.653
AFK61904.1
COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
     
 0.611
dtd
D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
       0.605
AFK61902.1
COG1126 ABC-type polar amino acid transport system, ATPase component.
       0.580
AFK61899.1
COG1396 Predicted transcriptional regulators.
 
    0.565
AFK64416.1
Family 1 extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
   
 0.552
AFK61900.1
Extracellular solute-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
    0.551
AFK64289.1
BFD/(2Fe-2S)-binding domain-containing protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
 
 0.499
AFK64288.1
Putative Pyridine nucleotide-disulfide oxidoreductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
 
 0.489
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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