STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61956.1COG3652 Predicted outer membrane protein. (192 aa)    
Predicted Functional Partners:
AFK61957.1
Hypothetical protein.
 
     0.740
AFK61958.1
Hypothetical protein.
       0.666
AFK61955.1
COG3237 Uncharacterized protein conserved in bacteria.
  
    0.609
AFK62113.1
Hypothetical protein; COG5478 Predicted small integral membrane protein.
  
    0.574
AFK62111.1
COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs.
  
    0.545
AFK63667.1
COG1793 ATP-dependent DNA ligase.
 
    0.497
ku
Putative Ku domain-containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
    0.483
AFK61977.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.476
AFK62896.1
COG1285 Uncharacterized membrane protein.
  
    0.444
AFK61965.1
Glycosyl transferase family protein; COG0859 ADP-heptose:LPS heptosyltransferase.
  
     0.443
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.