STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61962.1COG0438 Glycosyltransferase. (427 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
 0.934
AFK61965.1
Glycosyl transferase family protein; COG0859 ADP-heptose:LPS heptosyltransferase.
 
  
 0.930
AFK61966.1
ADP-heptose--LPS heptosyltransferase II; COG0859 ADP-heptose:LPS heptosyltransferase.
 
  
 0.920
AFK61964.1
Hydrolase, HAD-superfamily, subfamily IIIA; COG0241 Histidinol phosphatase and related phosphatases.
 
   
 0.901
AFK61963.1
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.870
AFK61969.1
COG1216 Predicted glycosyltransferases.
 
  
 0.795
AFK61972.1
COG1216 Predicted glycosyltransferases.
 
  
 0.726
AFK61967.1
Carbamoyltransferase; COG2192 Predicted carbamoyl transferase, NodU family.
 
   
 0.580
AFK61968.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
   
 0.483
AFK62027.1
D,D-heptose 1,7-bisphosphate phosphatase; COG0241 Histidinol phosphatase and related phosphatases.
 
   
 0.457
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.