STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61989.1Putative fimbrial usher protein; COG3188 P pilus assembly protein, porin PapC. (172 aa)    
Predicted Functional Partners:
AFK61988.1
Fimbrial biogenesis outer membrane usher protein; COG3188 P pilus assembly protein, porin PapC.
      0.975
AFK61990.1
COG3121 P pilus assembly protein, chaperone PapD.
  
 
 0.963
AFK61987.1
Fimbria adhesin protein.
  
 
 0.946
AFK63986.1
COG2831 Hemolysin activation/secretion protein.
   
  
 0.868
AFK61991.1
COG3539 P pilus assembly protein, pilin FimA.
  
 
 0.865
AFK61885.1
COG3121 P pilus assembly protein, chaperone PapD.
  
 
 0.697
AFK63884.1
TrwI; COG3704 Type IV secretory pathway, VirB6 components.
   
    0.406
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.