STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62098.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (228 aa)    
Predicted Functional Partners:
AFK62097.1
TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 0.995
AFK62096.1
TonB-dependent ferric siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 0.990
AFK63596.1
TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.973
AFK62626.1
FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
 
  
 0.764
AFK62625.1
COG3712 Fe2+-dicitrate sensor, membrane component.
 
  
 0.689
AFK62627.1
ECF subfamily RNA polymerase sigma-24 factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.637
AFK62716.1
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.620
AFK63630.1
Hypothetical protein.
  
 
 0.620
AFK62082.1
Putative TonB-dependent receptor; COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
  
  
 0.565
AFK62955.1
Putative voltage-gated ClC-type chloride channel ClcB.
  
 
 
 0.527
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.