STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62117.1COG2030 Acyl dehydratase. (165 aa)    
Predicted Functional Partners:
AFK62116.1
3-oxoacyl-[acyl-carrier-protein] reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 0.821
AFK62118.1
ATP-grasp domain-containing protein 3; COG1042 Acyl-CoA synthetase (NDP forming).
  
    0.781
AFK64095.1
Hypothetical protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
     0.703
AFK62119.1
COG0372 Citrate synthase.
  
 
 0.655
AFK64098.1
L-carnitine dehydratase/bile acid-inducible protein F; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
 
 
 0.581
AFK61979.1
COG2030 Acyl dehydratase.
  
     0.576
AFK61178.1
Hypothetical protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 0.549
AFK63330.1
Thiolase; COG0183 Acetyl-CoA acetyltransferase.
 
 
 0.459
AFK63388.1
Beta-ketoadipyl CoA thiolase; COG0183 Acetyl-CoA acetyltransferase.
 
 
 0.455
AFK63327.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.450
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.