STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62178.1COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family. (302 aa)    
Predicted Functional Partners:
AFK64241.1
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.928
AFK61511.1
COG1767 Triphosphoribosyl-dephospho-CoA synthetase.
 
  
 0.873
AFK62177.1
COG1960 Acyl-CoA dehydrogenases.
  
  
 0.736
AFK61515.1
Malonate decarboxylase subunit delta.
  
  
 0.706
AFK64099.1
Dehydratase; COG2030 Acyl dehydratase.
 
  
 0.547
AFK64515.1
Hypothetical protein.
 
  
 0.522
AFK63313.1
Hypothetical protein; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.491
AFK63656.1
Hypothetical protein; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.491
AFK63701.1
Class II aldolase and adducin N-terminal domain-containing protein 4; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.491
AFK63970.1
Class II aldolase/adducin domain protein; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.491
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.