STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompRCOG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (209 aa)    
Predicted Functional Partners:
AFK62015.1
Transcriptional regulatory protein OmpR; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
  
 
0.907
AFK61315.1
Phosphate regulon sensor protein; COG0642 Signal transduction histidine kinase.
 
 0.873
AFK61796.1
HAMP domain-containing protein 16; COG0642 Signal transduction histidine kinase.
 
 
 0.855
AFK60792.1
COG0642 Signal transduction histidine kinase.
 
 
 0.852
AFK62132.1
Histidine kinase; COG0642 Signal transduction histidine kinase.
 
 
 0.845
AFK62123.1
COG0642 Signal transduction histidine kinase.
 
 0.840
AFK63045.1
COG0642 Signal transduction histidine kinase.
 
 0.831
AFK63719.1
Histidine kinase; COG2205 Osmosensitive K+ channel histidine kinase.
 
 
 0.813
AFK64512.1
His Kinase A phosphoacceptor domain-containing protein 13; COG4252 Predicted transmembrane sensor domain.
 
 
 0.785
AFK62500.1
Two-component sensor kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.708
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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