STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62234.1Intracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (194 aa)    
Predicted Functional Partners:
msrB
Methionine sulfoxide reductase B; COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.897
AFK62233.1
bolA-like family protein 2; COG0271 Stress-induced morphogen (activity unknown); Belongs to the BolA/IbaG family.
 
    0.885
AFK62232.1
COG0760 Parvulin-like peptidyl-prolyl isomerase.
       0.774
AFK61317.1
COG4395 Uncharacterized protein conserved in bacteria.
  
    0.628
AFK63819.1
COG1145 Ferredoxin.
  
     0.516
thrB
COG2334 Putative homoserine kinase type II (protein kinase fold); Belongs to the pseudomonas-type ThrB family.
  
   
 0.500
secB
Preprotein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.446
AFK62236.1
Receptor family ligand binding region family protein 10; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
       0.446
AFK62600.1
Spermidine synthase-like protein; COG0421 Spermidine synthase.
  
     0.441
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.