STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62278.1COG0670 Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. (230 aa)    
Predicted Functional Partners:
AFK62280.1
Hypothetical protein; COG2927 DNA polymerase III, chi subunit.
 
     0.598
AFK61317.1
COG4395 Uncharacterized protein conserved in bacteria.
  
  
 0.565
AFK61787.1
Methyltransferase; COG0500 SAM-dependent methyltransferases.
 
     0.533
AFK63258.1
COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
  
    0.531
AFK62974.1
Peptidase family M48; COG0501 Zn-dependent protease with chaperone function.
 
  
 0.505
AFK62279.1
Hypothetical protein.
       0.501
pepA
Multifunctional aminopeptidase A; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.458
AFK62509.1
Colicin V production protein; COG1286 Uncharacterized membrane protein, required for colicin V production.
  
 
 0.435
msrB
Methionine sulfoxide reductase B; COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
  
   0.430
AFK61244.1
Stringent starvation protein A; COG0625 Glutathione S-transferase.
  
    0.422
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.