STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62291.1COG4378 Uncharacterized protein conserved in bacteria. (117 aa)    
Predicted Functional Partners:
AFK63515.1
Phasin family domain-containing protein.
  
     0.580
AFK61199.1
Hypothetical protein.
  
     0.550
AFK62943.1
COG3308 Predicted membrane protein.
  
     0.518
AFK61103.1
Hypothetical protein; COG2906 Bacterioferritin-associated ferredoxin.
  
    0.492
AFK63129.1
Dioxygenase; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
  
     0.487
AFK61714.1
MJ0042 family finger-like domain-containing protein.
  
     0.484
AFK61067.1
COG4984 Predicted membrane protein.
  
     0.478
AFK62290.1
COG1309 Transcriptional regulator.
 
     0.477
AFK63859.1
Surface antigen family protein; COG0729 Outer membrane protein.
  
     0.476
AFK62803.1
COG1426 Uncharacterized protein conserved in bacteria.
  
     0.447
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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