STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62381.1Type cbb3 cytochrome oxidase biogenesis protein CcoI; COG2217 Cation transport ATPase. (330 aa)    
Predicted Functional Partners:
AFK62382.1
Cytochrome oxidase maturation protein, cbb3-type; COG3197 Uncharacterized protein, possibly involved in nitrogen fixation.
  
  
 0.930
AFK62383.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1.
 
   
 0.868
AFK62385.1
COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
 
   
 0.816
AFK62387.1
Cytochrome C oxidase subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.800
AFK62384.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1.
 
   
 0.763
AFK62841.1
COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
 
   
 0.654
AFK62842.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1.
 
   
 0.605
AFK60846.1
NMT1/THI5-like family protein 3; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
  
   
 0.591
cysM
COG0031 Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.575
AFK60998.1
Copper-transporting ATPase 1; COG2608 Copper chaperone.
  
 
 0.568
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.