STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62398.1COG2841 Uncharacterized protein conserved in bacteria. (72 aa)    
Predicted Functional Partners:
AFK62386.1
Hypothetical protein; COG4736 Cbb3-type cytochrome oxidase, subunit 3.
  
    0.737
AFK61325.1
UDP-galactose-lipid carrier transferase.
 
    0.705
AFK63198.1
Hypothetical protein.
  
    0.630
AFK62399.1
Hypothetical protein; COG0628 Predicted permease.
       0.500
AFK62384.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1.
  
    0.461
AFK62383.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1.
  
    0.449
AFK61537.1
COG3047 Outer membrane protein W.
   
    0.429
AFK63615.1
MauN, ferredoxin-type protein essential for electron transfer; COG0348 Polyferredoxin.
  
    0.427
dksA
dnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
    0.414
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.