STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62467.1COG0760 Parvulin-like peptidyl-prolyl isomerase. (654 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly factor YaeT; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.730
cpoB
Hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.729
AFK62457.1
COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
 
   
 0.668
yidC
Membrane protein insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
  
 0.664
AFK62795.1
HflK protein; HflC and HflK could encode or regulate a protease.
 
    0.661
AFK63628.1
Putative TolQ-like translocation protein; COG0811 Biopolymer transport proteins.
  
  
 0.621
AFK62232.1
COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.614
AFK62529.1
COG2825 Outer membrane protein.
 
  
 0.607
ugpQ
Cytoplasmic glycerophosphodiester phosphodiesterase; COG0584 Glycerophosphoryl diester phosphodiesterase.
  
 
 0.598
AFK62794.1
HflC protein; HflC and HflK could regulate a protease.
 
    0.573
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.