Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFK61245.1 | AFK62006.1 | TKWG_03255 | TKWG_08010 | ClpXP protease specificity-enhancing factor; COG2969 Stringent starvation protein B. | Putative ABC transporter ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 0.684 |
| AFK61245.1 | AFK62242.1 | TKWG_03255 | TKWG_09665 | ClpXP protease specificity-enhancing factor; COG2969 Stringent starvation protein B. | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.736 |
| AFK61245.1 | AFK62542.1 | TKWG_03255 | TKWG_11720 | ClpXP protease specificity-enhancing factor; COG2969 Stringent starvation protein B. | COG2914 Uncharacterized protein conserved in bacteria; Belongs to the UPF0125 (RnfH) family. | 0.514 |
| AFK61245.1 | bamE | TKWG_03255 | TKWG_17880 | ClpXP protease specificity-enhancing factor; COG2969 Stringent starvation protein B. | Outer membrane lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.770 |
| AFK61615.1 | AFK62542.1 | TKWG_05685 | TKWG_11720 | Glutamate--cysteine ligase; COG2918 Gamma-glutamylcysteine synthetase; Belongs to the glutamate--cysteine ligase type 1 family. | COG2914 Uncharacterized protein conserved in bacteria; Belongs to the UPF0125 (RnfH) family. | 0.455 |
| AFK62006.1 | AFK61245.1 | TKWG_08010 | TKWG_03255 | Putative ABC transporter ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | ClpXP protease specificity-enhancing factor; COG2969 Stringent starvation protein B. | 0.684 |
| AFK62006.1 | AFK62242.1 | TKWG_08010 | TKWG_09665 | Putative ABC transporter ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.608 |
| AFK62006.1 | AFK62542.1 | TKWG_08010 | TKWG_11720 | Putative ABC transporter ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | COG2914 Uncharacterized protein conserved in bacteria; Belongs to the UPF0125 (RnfH) family. | 0.409 |
| AFK62006.1 | bamE | TKWG_08010 | TKWG_17880 | Putative ABC transporter ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | Outer membrane lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.690 |
| AFK62006.1 | dapE | TKWG_08010 | TKWG_14270 | Putative ABC transporter ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.406 |
| AFK62242.1 | AFK61245.1 | TKWG_09665 | TKWG_03255 | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | ClpXP protease specificity-enhancing factor; COG2969 Stringent starvation protein B. | 0.736 |
| AFK62242.1 | AFK62006.1 | TKWG_09665 | TKWG_08010 | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative ABC transporter ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 0.608 |
| AFK62242.1 | AFK62542.1 | TKWG_09665 | TKWG_11720 | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | COG2914 Uncharacterized protein conserved in bacteria; Belongs to the UPF0125 (RnfH) family. | 0.722 |
| AFK62242.1 | bamE | TKWG_09665 | TKWG_17880 | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Outer membrane lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.671 |
| AFK62242.1 | dapE | TKWG_09665 | TKWG_14270 | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.401 |
| AFK62541.1 | AFK62542.1 | TKWG_11715 | TKWG_11720 | COG2867 Oligoketide cyclase/lipid transport protein. | COG2914 Uncharacterized protein conserved in bacteria; Belongs to the UPF0125 (RnfH) family. | 0.931 |
| AFK62541.1 | AFK62543.1 | TKWG_11715 | TKWG_11725 | COG2867 Oligoketide cyclase/lipid transport protein. | COG1024 Enoyl-CoA hydratase/carnithine racemase. | 0.720 |
| AFK62541.1 | smpB | TKWG_11715 | TKWG_11710 | COG2867 Oligoketide cyclase/lipid transport protein. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.688 |
| AFK62542.1 | AFK61245.1 | TKWG_11720 | TKWG_03255 | COG2914 Uncharacterized protein conserved in bacteria; Belongs to the UPF0125 (RnfH) family. | ClpXP protease specificity-enhancing factor; COG2969 Stringent starvation protein B. | 0.514 |
| AFK62542.1 | AFK61615.1 | TKWG_11720 | TKWG_05685 | COG2914 Uncharacterized protein conserved in bacteria; Belongs to the UPF0125 (RnfH) family. | Glutamate--cysteine ligase; COG2918 Gamma-glutamylcysteine synthetase; Belongs to the glutamate--cysteine ligase type 1 family. | 0.455 |
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