STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62554.1Threonine and homoserine efflux protein; COG5006 Predicted permease, DMT superfamily. (297 aa)    
Predicted Functional Partners:
AFK62552.1
COG0625 Glutathione S-transferase; Belongs to the GST superfamily.
       0.773
AFK62553.1
COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.773
AFK60758.1
COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
 
     0.454
AFK62555.1
COG3181 Uncharacterized protein conserved in bacteria.
       0.423
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.