STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62561.1IclR family transcriptional regulator; COG3386 Gluconolactonase. (291 aa)    
Predicted Functional Partners:
AFK64250.1
COG1414 Transcriptional regulator.
      0.821
AFK61344.1
Hypothetical protein; COG3386 Gluconolactonase.
  
     0.692
AFK64092.1
Transcriptional regulator family protein 24; COG1414 Transcriptional regulator.
      0.654
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
    
 0.524
AFK64462.1
COG3734 2-keto-3-deoxy-galactonokinase.
 
   
 0.518
AFK61560.1
NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
   
 0.517
rplQ
COG0203 Ribosomal protein L17.
 
      0.430
AFK64443.1
Hypothetical protein; COG2017 Galactose mutarotase and related enzymes.
 
   
 0.401
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.