STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62566.1Putative LacI family transcriptional regulator; COG1609 Transcriptional regulators. (214 aa)    
Predicted Functional Partners:
AFK62567.1
COG1609 Transcriptional regulators.
     0.994
AFK64043.1
COG1609 Transcriptional regulators.
  
     0.694
AFK63603.1
COG1609 Transcriptional regulators.
  
     0.686
AFK62683.1
Phosphocarrier protein HPr; COG1925 Phosphotransferase system, HPr-related proteins.
   
 
 0.640
AFK63193.1
Family 1 extracellular solute-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
  
 0.564
AFK61547.1
COG1609 Transcriptional regulators.
 
  
 0.525
AFK62568.1
COG3181 Uncharacterized protein conserved in bacteria.
       0.472
AFK63846.1
COG1737 Transcriptional regulators.
  
   
 0.462
AFK64460.1
2-dehydro-3-deoxygluconokinase; COG0524 Sugar kinases, ribokinase family.
 
  
 0.461
AFK60873.1
Exported lactonase; COG2706 3-carboxymuconate cyclase.
 
 
   0.432
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.