STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62626.1FecR; COG3712 Fe2+-dicitrate sensor, membrane component. (274 aa)    
Predicted Functional Partners:
AFK62627.1
ECF subfamily RNA polymerase sigma-24 factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.985
AFK62625.1
COG3712 Fe2+-dicitrate sensor, membrane component.
     0.979
AFK62082.1
Putative TonB-dependent receptor; COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
 
 0.772
AFK62098.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.764
AFK63555.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.763
AFK63596.1
TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.752
AFK63598.1
TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.752
AFK62096.1
TonB-dependent ferric siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.749
AFK62624.1
TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.719
AFK63539.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.670
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.