STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62668.1COG2186 Transcriptional regulators. (254 aa)    
Predicted Functional Partners:
AFK63589.1
GntR domain-containing protein; COG2186 Transcriptional regulators.
 
     0.777
AFK63493.1
COG1802 Transcriptional regulators.
  
  
 0.764
AFK62657.1
COG1802 Transcriptional regulators.
  
  
 0.741
AFK60764.1
COG1802 Transcriptional regulators.
  
  
 0.724
AFK63785.1
COG1802 Transcriptional regulators.
  
  
 0.724
AFK64016.1
COG1802 Transcriptional regulators.
  
  
 0.687
AFK64532.1
COG1802 Transcriptional regulators.
  
  
 0.687
AFK62049.1
COG2188 Transcriptional regulators.
  
    0.674
AFK60776.1
COG1802 Transcriptional regulators.
  
  
 0.666
AFK63501.1
COG1802 Transcriptional regulators.
  
  
 0.632
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.