STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62727.1COG2721 Altronate dehydratase. (505 aa)    
Predicted Functional Partners:
AFK64205.1
Short chain dehydrogenase/reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.919
AFK61284.1
COG0036 Pentose-5-phosphate-3-epimerase.
     
 0.800
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
AFK64256.1
D-galactarate dehydratase/altronate hydrolase family protein 2; COG2721 Altronate dehydratase.
 
     0.724
AFK62726.1
COG2186 Transcriptional regulators.
 
     0.687
AFK64460.1
2-dehydro-3-deoxygluconokinase; COG0524 Sugar kinases, ribokinase family.
 
  
 0.622
AFK64461.1
COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
  
 0.544
AFK61154.1
Tripartite ATP-independent periplasmic transporter DctQ; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.519
AFK64443.1
Hypothetical protein; COG2017 Galactose mutarotase and related enzymes.
 
   
 0.472
AFK62725.1
COG0765 ABC-type amino acid transport system, permease component.
  
    0.415
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.