STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62848.1COG1024 Enoyl-CoA hydratase/carnithine racemase. (257 aa)    
Predicted Functional Partners:
AFK61452.1
hydroxymethylglutaryl-CoA lyase; COG0119 Isopropylmalate/homocitrate/citramalate synthases.
 
 0.992
AFK62890.1
HMGL-like family protein; COG0119 Isopropylmalate/homocitrate/citramalate synthases.
 
 0.992
AFK62852.1
Carboxyl transferase domain-containing protein 2; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 0.969
AFK62851.1
COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
 
 0.938
AFK61592.1
Hypothetical protein; COG0119 Isopropylmalate/homocitrate/citramalate synthases.
  
 0.929
AFK62826.1
Putative enoyl-CoA hydratase/isomerase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
   0.822
AFK63403.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
     0.744
AFK63808.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
   0.698
AFK61074.1
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
 0.669
AFK61075.1
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.564
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.