STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62861.1Hypothetical protein. (358 aa)    
Predicted Functional Partners:
AFK64010.1
long-chain-fatty-acid--CoA ligase LcfB; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
  
 0.875
AFK63434.1
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
   
    0.872
AFK64518.1
COG2079 Uncharacterized protein involved in propionate catabolism.
   
    0.872
AFK62862.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.545
AFK61498.1
Isoflavone reductase.
  
 
  0.537
AFK62860.1
Extra-cytoplasmic solute receptor; COG3181 Uncharacterized protein conserved in bacteria.
       0.508
AFK62654.1
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
 
  
 0.502
AFK64044.1
COG2175 Probable taurine catabolism dioxygenase.
  
     0.475
AFK64152.1
Taurine ABC transporter substrate-binding protein; COG4521 ABC-type taurine transport system, periplasmic component.
  
  
 0.418
AFK64039.1
COG2175 Probable taurine catabolism dioxygenase.
  
     0.404
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.