STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62865.1COG1309 Transcriptional regulator. (214 aa)    
Predicted Functional Partners:
AFK62866.1
Putative oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
       0.773
AFK64138.1
COG1846 Transcriptional regulators.
  
   
 0.699
AFK63930.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.561
AFK63944.1
COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
  
 0.511
AFK64352.1
NAD-dependent epimerase/dehydratase; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
  
   
 0.437
AFK63929.1
Coenzyme F420-dependent NADP oxidoreductase; COG2085 Predicted dinucleotide-binding enzymes.
  
     0.433
AFK64412.1
COG1309 Transcriptional regulator.
  
     0.420
AFK63972.1
COG1309 Transcriptional regulator.
  
     0.415
AFK64497.1
Putative glucose dehydrogenase subunit alpha; COG2303 Choline dehydrogenase and related flavoproteins.
  
  
 0.414
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.