Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFK61214.1 | AFK62977.1 | TKWG_03070 | TKWG_14615 | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.488 |
| AFK61214.1 | rph | TKWG_03070 | TKWG_11315 | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.403 |
| AFK61277.1 | AFK62977.1 | TKWG_03430 | TKWG_14615 | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.488 |
| AFK61277.1 | rph | TKWG_03430 | TKWG_11315 | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.403 |
| AFK61706.1 | AFK62977.1 | TKWG_06255 | TKWG_14615 | COG0557 Exoribonuclease R. | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.476 |
| AFK61706.1 | rph | TKWG_06255 | TKWG_11315 | COG0557 Exoribonuclease R. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.920 |
| AFK62977.1 | AFK61214.1 | TKWG_14615 | TKWG_03070 | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | 0.488 |
| AFK62977.1 | AFK61277.1 | TKWG_14615 | TKWG_03430 | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | 0.488 |
| AFK62977.1 | AFK61706.1 | TKWG_14615 | TKWG_06255 | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | COG0557 Exoribonuclease R. | 0.476 |
| AFK62977.1 | AFK63058.1 | TKWG_14615 | TKWG_15200 | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | Hypothetical protein; COG0557 Exoribonuclease R. | 0.476 |
| AFK62977.1 | AFK63520.1 | TKWG_14615 | TKWG_18260 | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | 0.488 |
| AFK62977.1 | rph | TKWG_14615 | TKWG_11315 | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.623 |
| AFK62977.1 | rplS | TKWG_14615 | TKWG_14620 | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.629 |
| AFK63058.1 | AFK62977.1 | TKWG_15200 | TKWG_14615 | Hypothetical protein; COG0557 Exoribonuclease R. | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.476 |
| AFK63058.1 | rph | TKWG_15200 | TKWG_11315 | Hypothetical protein; COG0557 Exoribonuclease R. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.931 |
| AFK63520.1 | AFK62977.1 | TKWG_18260 | TKWG_14615 | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.488 |
| AFK63520.1 | rph | TKWG_18260 | TKWG_11315 | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.403 |
| rph | AFK61214.1 | TKWG_11315 | TKWG_03070 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | 0.403 |
| rph | AFK61277.1 | TKWG_11315 | TKWG_03430 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. | 0.403 |
| rph | AFK61706.1 | TKWG_11315 | TKWG_06255 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | COG0557 Exoribonuclease R. | 0.920 |
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