STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62988.1Type II secretion system protein; COG4965 Flp pilus assembly protein TadB. (281 aa)    
Predicted Functional Partners:
AFK62987.1
COG2064 Flp pilus assembly protein TadC.
 
  
 0.995
AFK62989.1
General secretion pathway ATPase; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
 
  
 0.990
AFK62990.1
SAF domain protein; COG3745 Flp pilus assembly protein CpaB.
 
  
 0.989
AFK62986.1
Hypothetical protein.
 
     0.946
AFK62993.1
Hypothetical protein.
  
  
 0.866
AFK62991.1
Hypothetical protein.
       0.731
AFK63148.1
Hypothetical protein.
  
  
 0.679
AFK62992.1
Hypothetical protein.
       0.660
AFK62994.1
Integral membrane protein.
       0.654
AFK62462.1
ComEC/Rec2; COG0658 Predicted membrane metal-binding protein.
      
 0.412
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.