STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK62989.1General secretion pathway ATPase; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family. (1180 aa)    
Predicted Functional Partners:
AFK62988.1
Type II secretion system protein; COG4965 Flp pilus assembly protein TadB.
 
  
 0.990
AFK62987.1
COG2064 Flp pilus assembly protein TadC.
 
  
 0.988
AFK62990.1
SAF domain protein; COG3745 Flp pilus assembly protein CpaB.
 
  
 0.985
AFK62986.1
Hypothetical protein.
 
     0.949
AFK62993.1
Hypothetical protein.
  
  
 0.854
AFK62994.1
Integral membrane protein.
       0.749
AFK62991.1
Hypothetical protein.
       0.731
AFK63148.1
Hypothetical protein.
  
  
 0.720
AFK62502.1
Dihydrolipoamide acetyltransferase; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
   
 
 0.680
AFK62503.1
Dihydrolipoamide acetyltransferase; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
   
 
 0.680
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.