STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63042.1Hypothetical protein; COG0183 Acetyl-CoA acetyltransferase. (99 aa)    
Predicted Functional Partners:
AFK63443.1
Hypothetical protein.
  
     0.750
AFK62943.1
COG3308 Predicted membrane protein.
  
     0.742
AFK63523.1
COG4391 Uncharacterized protein conserved in bacteria.
  
     0.720
AFK63257.1
COG2142 Succinate dehydrogenase, hydrophobic anchor subunit.
  
     0.713
AFK61199.1
Hypothetical protein.
  
     0.706
AFK63515.1
Phasin family domain-containing protein.
  
     0.695
AFK63129.1
Dioxygenase; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
  
     0.648
AFK62600.1
Spermidine synthase-like protein; COG0421 Spermidine synthase.
  
     0.641
AFK62212.1
Hypothetical protein.
  
     0.625
AFK63043.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
       0.605
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.