STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63048.1Exonuclease SbcC; COG0419 ATPase involved in DNA repair. (647 aa)    
Predicted Functional Partners:
AFK63047.1
SbcC; COG0419 ATPase involved in DNA repair.
     0.994
AFK63049.1
COG0420 DNA repair exonuclease.
 
 0.994
AFK63050.1
SbcD; COG0420 DNA repair exonuclease.
 
 0.989
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.919
AFK63542.1
COG0514 Superfamily II DNA helicase.
  
 0.713
AFK63667.1
COG1793 ATP-dependent DNA ligase.
   
 0.633
AFK61066.1
DNA topoisomerase III; COG0550 Topoisomerase IA.
  
 0.614
AFK63051.1
Nuclease SbcCD subunit D.
       0.548
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.547
AFK62612.1
Hypothetical protein; COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB.
  
 0.504
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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