STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdkA3-deoxy-D-manno-octulosonic-acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. (240 aa)    
Predicted Functional Partners:
AFK61412.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
   
 0.990
AFK63325.1
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.877
AFK63104.1
Permease; COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.
 
     0.825
AFK62538.1
Peptidylprolyl isomerase, FKBP-type; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
    
 0.823
AFK62810.1
COG2124 Cytochrome P450.
    
 0.819
AFK62548.1
Ankyrin; COG0666 FOG: Ankyrin repeat.
  
 
 0.817
AFK63103.1
Hemoglobin-like protein; COG2346 Truncated hemoglobins.
       0.800
AFK63105.1
Membrane protein; COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.
       0.798
AFK60825.1
Ankyrin repeat-containing protein; COG0666 FOG: Ankyrin repeat.
    
 0.787
AFK64113.1
Hypothetical protein.
    
 0.770
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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