STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpD2-methylcitrate dehydratase; COG2079 Uncharacterized protein involved in propionate catabolism. (483 aa)    
Predicted Functional Partners:
AFK63261.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
 
 0.992
AFK63770.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
 
 0.980
prpB
2-methylisocitrate lyase; COG2513 PEP phosphonomutase and related enzymes.
 
  
 0.942
AFK63767.1
AcnD-accessory protein PrpF; COG2828 Uncharacterized protein conserved in bacteria.
  
 
  0.938
AFK63268.1
Bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; COG1049 Aconitase B.
 
   
 0.932
AFK63769.1
Aconitate hydratase; COG1048 Aconitase A.
  
 
 0.920
AFK63766.1
Methylisocitrate lyase; COG2513 PEP phosphonomutase and related enzymes.
 
  
 0.719
AFK64047.1
Isocitrate lyase family protein; COG2513 PEP phosphonomutase and related enzymes.
 
  
 0.716
gltA
COG0372 Citrate synthase; Belongs to the citrate synthase family.
 
 
 0.706
acnA
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.601
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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