STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acnAAconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (895 aa)    
Predicted Functional Partners:
gltA
COG0372 Citrate synthase; Belongs to the citrate synthase family.
 
 0.981
AFK61055.1
COG0372 Citrate synthase.
  
 0.973
AFK63992.1
COG0372 Citrate synthase.
  
 0.973
AFK64009.1
COG0372 Citrate synthase.
  
 0.973
AFK63441.1
COG0538 Isocitrate dehydrogenases.
 
 0.968
AFK62119.1
COG0372 Citrate synthase.
  
 0.962
AFK63268.1
Bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; COG1049 Aconitase B.
    
 0.913
AFK63261.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
 
 0.863
AFK63770.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
 
 0.862
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.696
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.