STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63330.1Thiolase; COG0183 Acetyl-CoA acetyltransferase. (390 aa)    
Predicted Functional Partners:
AFK63328.1
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
 
 0.980
AFK63339.1
COG2030 Acyl dehydratase.
 
 
 0.832
AFK63294.1
Hypothetical protein; COG2030 Acyl dehydratase.
 
 
 0.779
AFK63394.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 0.779
AFK63329.1
Hypothetical protein.
       0.773
AFK63338.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.755
AFK64337.1
Hypothetical protein; COG1960 Acyl-CoA dehydrogenases.
 
 
 0.741
AFK63327.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.712
AFK63402.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.661
AFK64252.1
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 
  
 0.661
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.