STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63396.1COG1960 Acyl-CoA dehydrogenases. (398 aa)    
Predicted Functional Partners:
AFK63398.1
COG1960 Acyl-CoA dehydrogenases.
     0.987
AFK63397.1
COG1960 Acyl-CoA dehydrogenases.
     0.916
AFK63395.1
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.865
AFK63394.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.853
AFK61035.1
Hypothetical protein; COG1960 Acyl-CoA dehydrogenases.
 
     0.795
AFK63393.1
COG0183 Acetyl-CoA acetyltransferase.
 
 
 0.768
AFK63392.1
COG0183 Acetyl-CoA acetyltransferase.
 
 
 0.678
AFK63399.1
Thioesterase superfamily protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
  
 0.672
AFK60772.1
Hypothetical protein; COG2030 Acyl dehydratase.
 
 0.671
AFK61084.1
COG2030 Acyl dehydratase.
 
 0.671
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.