STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63485.1Hypothetical protein. (44 aa)    
Predicted Functional Partners:
AFK63484.1
Extracellular solute-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
       0.765
AFK63483.1
Binding-protein dependent transport system inner membrane protein; COG0395 ABC-type sugar transport system, permease component.
  
  
 0.747
AFK63482.1
COG1175 ABC-type sugar transport systems, permease components.
     
 0.732
AFK63481.1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
       0.725
AFK63480.1
Haloacid dehalogenase-like protein hydrolase; COG0546 Predicted phosphatases.
       0.723
AFK63479.1
COG1349 Transcriptional regulators of sugar metabolism.
  
    0.551
AFK61707.1
Hypothetical protein; COG3150 Predicted esterase.
  
  
 0.519
AFK60825.1
Ankyrin repeat-containing protein; COG0666 FOG: Ankyrin repeat.
   
 
 0.470
AFK62548.1
Ankyrin; COG0666 FOG: Ankyrin repeat.
   
 
 0.470
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.