STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63518.1Membrane protein. (284 aa)    
Predicted Functional Partners:
AFK63519.1
Thioredoxin-like protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
   
 0.827
AFK63144.1
COG1714 Predicted membrane protein/domain.
  
     0.762
AFK62228.1
Lysophospholipid transporter LplT; COG0477 Permeases of the major facilitator superfamily.
  
     0.722
lptA
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
     0.714
AFK63515.1
Phasin family domain-containing protein.
 
     0.704
AFK62958.1
Hypothetical protein.
  
     0.687
AFK61302.1
Hypothetical protein.
  
     0.677
AFK62901.1
COG3203 Outer membrane protein (porin).
  
     0.674
AFK62508.1
COG3087 Cell division protein.
  
     0.669
AFK63517.1
Hypothetical protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA.
       0.664
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.