STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63603.1COG1609 Transcriptional regulators. (356 aa)    
Predicted Functional Partners:
AFK62567.1
COG1609 Transcriptional regulators.
  
     0.768
AFK62683.1
Phosphocarrier protein HPr; COG1925 Phosphotransferase system, HPr-related proteins.
 
 
 
 0.690
AFK62566.1
Putative LacI family transcriptional regulator; COG1609 Transcriptional regulators.
  
     0.686
AFK62562.1
COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.556
AFK63599.1
Zinc-containing alcohol dehydrogenase superfamily protein; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
 
 
 0.551
hisD-2
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
   
 0.520
AFK60914.1
COG2188 Transcriptional regulators.
  
   
 0.515
AFK63601.1
NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
 0.478
AFK64202.1
COG2188 Transcriptional regulators.
  
   
 0.461
AFK61355.1
COG2188 Transcriptional regulators.
  
   
 0.458
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.