STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63615.1MauN, ferredoxin-type protein essential for electron transfer; COG0348 Polyferredoxin. (295 aa)    
Predicted Functional Partners:
AFK63614.1
MauM, ferredoxin-type protein essential for electron transfer; COG1145 Ferredoxin.
  
 0.997
narZ
COG5013 Nitrate reductase alpha subunit.
  
  
 0.594
AFK62387.1
Cytochrome C oxidase subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
  
 0.589
AFK62386.1
Hypothetical protein; COG4736 Cbb3-type cytochrome oxidase, subunit 3.
  
  
 0.556
AFK63819.1
COG1145 Ferredoxin.
 
 
 0.554
AFK63612.1
Amine dehydrogenase.
 
  
 0.537
narH
COG1140 Nitrate reductase beta subunit.
  
  
 0.512
AFK62385.1
COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
  
 0.472
AFK62841.1
COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
  
 0.472
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.467
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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