STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63752.1COG1846 Transcriptional regulators. (160 aa)    
Predicted Functional Partners:
AFK63746.1
Peptidase M29 family protein; COG2309 Leucyl aminopeptidase (aminopeptidase T).
 
  
 0.758
AFK60837.1
Hypothetical protein; COG2309 Leucyl aminopeptidase (aminopeptidase T).
 
  
 0.756
AFK60906.1
Hypothetical protein; COG2309 Leucyl aminopeptidase (aminopeptidase T).
 
  
 0.749
AFK60835.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.698
maiA
Asp/Glu/hydantoin racemase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
   
 0.655
AFK60905.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.639
AFK63748.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.610
AFK63750.1
Aldehyde dehydrogenase; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
  
     0.594
AFK60907.1
Isochorismatase hydrolase; COG1335 Amidases related to nicotinamidase.
 
  
 0.400
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.