STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63768.1Methylitaconate delta2-delta3-isomerase; COG2828 Uncharacterized protein conserved in bacteria. (70 aa)    
Predicted Functional Partners:
AFK63769.1
Aconitate hydratase; COG1048 Aconitase A.
 
  
 0.972
AFK63767.1
AcnD-accessory protein PrpF; COG2828 Uncharacterized protein conserved in bacteria.
 
     0.946
AFK63770.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
 
  
 0.890
prpB
2-methylisocitrate lyase; COG2513 PEP phosphonomutase and related enzymes.
 
  
 0.803
AFK63766.1
Methylisocitrate lyase; COG2513 PEP phosphonomutase and related enzymes.
  
  
 0.667
AFK63261.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
 
  
 0.598
acnA
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
  
 0.582
AFK63771.1
COG1396 Predicted transcriptional regulators.
       0.478
AFK61477.1
COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
     
 0.443
AFK64047.1
Isocitrate lyase family protein; COG2513 PEP phosphonomutase and related enzymes.
  
  
 0.424
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.