STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63769.1Aconitate hydratase; COG1048 Aconitase A. (867 aa)    
Predicted Functional Partners:
AFK63767.1
AcnD-accessory protein PrpF; COG2828 Uncharacterized protein conserved in bacteria.
 
 
 0.996
AFK63770.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
 
 0.994
AFK63261.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
 
 0.976
AFK63768.1
Methylitaconate delta2-delta3-isomerase; COG2828 Uncharacterized protein conserved in bacteria.
 
  
 0.972
prpD
2-methylcitrate dehydratase; COG2079 Uncharacterized protein involved in propionate catabolism.
  
 
 0.920
prpB
2-methylisocitrate lyase; COG2513 PEP phosphonomutase and related enzymes.
 
 0.786
gltA
COG0372 Citrate synthase; Belongs to the citrate synthase family.
  
 0.752
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.696
rpmB
COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.694
rpmF
COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.684
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.