AFK63875.1 protein (Advenella kashmirensis WT001)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

AFK63875.1

COG1652 Uncharacterized protein containing LysM domain. (144 aa)

Predicted Functional Partners:

AFK61039.1

0.884

AFK63974.1

0.880

AFK64135.1

0.688

AFK61859.1

0.649

AFK64084.1

0.565

AFK61509.1

0.494

AFK62247.1

0.488

AFK63638.1

0.448

AFK61291.1

0.428

AFK62679.1

0.428

Your Current Organism:

Advenella kashmirensis WT001

NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFK61039.1	AFK62247.1	TKWG_01945	TKWG_09700	Hypothetical protein.	Hypothetical protein; COG0655 Multimeric flavodoxin WrbA.	0.446
AFK61039.1	AFK63875.1	TKWG_01945	TKWG_20725	Hypothetical protein.	COG1652 Uncharacterized protein containing LysM domain.	0.884
AFK61039.1	AFK64135.1	TKWG_01945	TKWG_22465	Hypothetical protein.	COG3126 Uncharacterized protein conserved in bacteria.	0.409
AFK61291.1	AFK61509.1	TKWG_03530	TKWG_04980	Hypothetical protein; COG2823 Predicted periplasmic or secreted lipoprotein.	OmpA/MotB domain protein; COG2913 Small protein A (tmRNA-binding).	0.443
AFK61291.1	AFK63875.1	TKWG_03530	TKWG_20725	Hypothetical protein; COG2823 Predicted periplasmic or secreted lipoprotein.	COG1652 Uncharacterized protein containing LysM domain.	0.428
AFK61509.1	AFK61291.1	TKWG_04980	TKWG_03530	OmpA/MotB domain protein; COG2913 Small protein A (tmRNA-binding).	Hypothetical protein; COG2823 Predicted periplasmic or secreted lipoprotein.	0.443
AFK61509.1	AFK62679.1	TKWG_04980	TKWG_12665	OmpA/MotB domain protein; COG2913 Small protein A (tmRNA-binding).	Putative cytochrome c5.	0.443
AFK61509.1	AFK63875.1	TKWG_04980	TKWG_20725	OmpA/MotB domain protein; COG2913 Small protein A (tmRNA-binding).	COG1652 Uncharacterized protein containing LysM domain.	0.494
AFK61859.1	AFK63875.1	TKWG_07140	TKWG_20725	ElaB-like protein.	COG1652 Uncharacterized protein containing LysM domain.	0.649
AFK61859.1	AFK64135.1	TKWG_07140	TKWG_22465	ElaB-like protein.	COG3126 Uncharacterized protein conserved in bacteria.	0.400
AFK62247.1	AFK61039.1	TKWG_09700	TKWG_01945	Hypothetical protein; COG0655 Multimeric flavodoxin WrbA.	Hypothetical protein.	0.446
AFK62247.1	AFK63875.1	TKWG_09700	TKWG_20725	Hypothetical protein; COG0655 Multimeric flavodoxin WrbA.	COG1652 Uncharacterized protein containing LysM domain.	0.488
AFK62247.1	AFK63974.1	TKWG_09700	TKWG_21395	Hypothetical protein; COG0655 Multimeric flavodoxin WrbA.	Hypothetical protein.	0.437
AFK62247.1	AFK64135.1	TKWG_09700	TKWG_22465	Hypothetical protein; COG0655 Multimeric flavodoxin WrbA.	COG3126 Uncharacterized protein conserved in bacteria.	0.647
AFK62679.1	AFK61509.1	TKWG_12665	TKWG_04980	Putative cytochrome c5.	OmpA/MotB domain protein; COG2913 Small protein A (tmRNA-binding).	0.443
AFK62679.1	AFK63875.1	TKWG_12665	TKWG_20725	Putative cytochrome c5.	COG1652 Uncharacterized protein containing LysM domain.	0.428
AFK63638.1	AFK63875.1	TKWG_19105	TKWG_20725	COG0693 Putative intracellular protease/amidase.	COG1652 Uncharacterized protein containing LysM domain.	0.448
AFK63875.1	AFK61039.1	TKWG_20725	TKWG_01945	COG1652 Uncharacterized protein containing LysM domain.	Hypothetical protein.	0.884
AFK63875.1	AFK61291.1	TKWG_20725	TKWG_03530	COG1652 Uncharacterized protein containing LysM domain.	Hypothetical protein; COG2823 Predicted periplasmic or secreted lipoprotein.	0.428
AFK63875.1	AFK61509.1	TKWG_20725	TKWG_04980	COG1652 Uncharacterized protein containing LysM domain.	OmpA/MotB domain protein; COG2913 Small protein A (tmRNA-binding).	0.494

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Network Stats

number of nodes:

6

number of edges:

6

average node degree:

2

avg. local clustering coefficient:

0.85

expected number of edges:

5

PPI enrichment p-value:

0.431

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030956

glutamyl-tRNA(Gln) amidotransferase complex

3 of 4

2.28

1.95

0.00019

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:889

Amidase, and asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity

7 of 10

2.25

5.01

1.66e-11

CL:891

Styrene degradation

5 of 5

2.4

4.02

1.11e-08

CL:856

Mixed, incl. Glutathione metabolism, and Styrene degradation

8 of 31

1.81

3.82

3.71e-11

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

rrd00643

Styrene degradation

7 of 8

2.34

5.71

8.59e-13

rrd00627

Aminobenzoate degradation

5 of 9

2.15

3.55

3.41e-08

rrd00360

Phenylalanine metabolism

5 of 16

1.9

2.9

2.28e-07

rrd00330

Arginine and proline metabolism

5 of 21

1.78

2.6

5.49e-07

rrd00380

Tryptophan metabolism

4 of 14

1.86

2.33

6.82e-06

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0030956

glutamyl-tRNA(Gln) amidotransferase complex

4 of 5

2.3

2.76

4.13e-06

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01425

Amidase

3 of 4

2.28

1.66

0.00072

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036928

Amidase signature (AS) superfamily

3 of 4

2.28

1.45

0.0019

IPR023631

Amidase signature domain

3 of 4

2.28

1.45

0.0019

IPR020556

Amidase, conserved site

3 of 4

2.28

1.45

0.0019

IPR000120

Amidase

3 of 4

2.28

1.45

0.0019

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00882

Coenzyme A transferase

2 of 4

2.1

0.91

0.0199

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