STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63904.1Hypothetical protein. (87 aa)    
Predicted Functional Partners:
AFK64304.1
COG3157 Hemolysin-coregulated protein (uncharacterized).
 
   
 0.700
AFK63905.1
Hypothetical protein.
       0.682
AFK64306.1
COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.657
AFK64301.1
COG3519 Uncharacterized protein conserved in bacteria.
 
  
 0.652
AFK63906.1
Hypothetical protein.
       0.620
AFK64305.1
COG3517 Uncharacterized protein conserved in bacteria.
 
  
 0.606
AFK64307.1
Protein ImpA; COG3515 Uncharacterized protein conserved in bacteria.
 
  
 0.553
AFK61391.1
COG3520 Uncharacterized protein conserved in bacteria.
 
   
 0.543
AFK61395.1
COG3455 Uncharacterized protein conserved in bacteria.
  
  
 0.530
AFK61394.1
Lipoprotein; COG3521 Uncharacterized protein conserved in bacteria.
 
  
 0.476
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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