STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63919.1COG0640 Predicted transcriptional regulators. (100 aa)    
Predicted Functional Partners:
AFK63918.1
Zinc-binding dehydrogenase family protein 3; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
     0.701
AFK63920.1
Major facilitator superfamily protein; COG2814 Arabinose efflux permease.
     
 0.555
AFK63921.1
COG2207 AraC-type DNA-binding domain-containing proteins.
  
  
 0.443
AFK62079.1
Heavy metal translocating P-type ATPase; COG2217 Cation transport ATPase.
  
  
 0.426
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.