STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63944.1COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding. (188 aa)    
Predicted Functional Partners:
AFK60758.1
COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
     0.698
AFK64412.1
COG1309 Transcriptional regulator.
  
  
 0.656
AFK62865.1
COG1309 Transcriptional regulator.
  
  
 0.511
AFK64225.1
Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases.
  
     0.474
AFK63943.1
COG3905 Predicted transcriptional regulator.
       0.465
AFK62893.1
COG1396 Predicted transcriptional regulators.
  
     0.446
AFK61181.1
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
  
     0.425
AFK63931.1
Regulatory protein TetR; COG1309 Transcriptional regulator.
  
  
 0.411
AFK60950.1
Putative HTH domain-containing protein; COG1396 Predicted transcriptional regulators.
  
     0.405
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
Server load: low (24%) [HD]