STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK63994.1COG3181 Uncharacterized protein conserved in bacteria. (334 aa)    
Predicted Functional Partners:
AFK63993.1
COG1454 Alcohol dehydrogenase, class IV.
       0.773
AFK60864.1
COG3181 Uncharacterized protein conserved in bacteria.
  
     0.714
AFK62353.1
Hypothetical protein.
 
    0.629
AFK60870.1
COG3333 Uncharacterized protein conserved in bacteria.
  
 0.617
AFK64430.1
Hypothetical protein.
 
    0.617
AFK63995.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.526
AFK63992.1
COG0372 Citrate synthase.
       0.495
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.