STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64006.1Putative 4-carboxymuconolactone decarboxylase; COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit. (127 aa)    
Predicted Functional Partners:
AFK60815.1
3-carboxy-cis,cis-muconate cycloisomerase; COG0015 Adenylosuccinate lyase.
 
 
 0.951
AFK61752.1
Beta-ketoadipate enol-lactone hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
 
 0.922
AFK63715.1
COG4829 Muconolactone delta-isomerase.
    
 0.908
AFK61080.1
Hypothetical protein.
    
 0.907
AFK61546.1
Hypothetical protein.
    
 0.907
AFK62997.1
Carboxymuconolactone decarboxylase.
    
 0.907
AFK62825.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
 
 0.906
AFK64007.1
Putative MerR family transcriptional regulator; COG0789 Predicted transcriptional regulators.
 
     0.906
AFK64005.1
Serine/threonine-protein kinase.
       0.776
AFK64004.1
Serine/threonine-protein kinase; COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase.
       0.709
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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