STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64010.1long-chain-fatty-acid--CoA ligase LcfB; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (531 aa)    
Predicted Functional Partners:
AFK63434.1
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
  
 0.880
AFK62861.1
Hypothetical protein.
  
  
 0.875
AFK64518.1
COG2079 Uncharacterized protein involved in propionate catabolism.
  
    0.872
AFK63145.1
COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
 0.761
AFK61058.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
     0.759
AFK64009.1
COG0372 Citrate synthase.
 
  
 0.613
AFK62179.1
AMP-dependent synthetase/ligase; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
0.577
AFK61931.1
3,4-dehydroadipyl-CoA semialdehyde dehydrogenase BoxD; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
0.567
AFK62810.1
COG2124 Cytochrome P450.
  
 0.558
AFK62294.1
COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
0.553
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.